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Fit a CmdStan model using NUTS

Usage

enw_sample(data, model = epinowcast::enw_model(), diagnostics = TRUE, ...)

Arguments

data

A list of data as produced by model modules (for example enw_expectation(), enw_obs(), etc.) and as required for use the model being used.

model

A cmdstanr model object as loaded by enw_model() or as supplied by the user.

diagnostics

Logical, defaults to TRUE. Should fitting diagnostics be returned as a data.frame.

...

Additional parameters passed to the sample method of cmdstanr.

Value

A data.frame containing the cmdstanr fit, the input data, the fitting arguments, and optionally summary diagnostics.

See also

Functions used to help convert models into the format required for stan enw_formula_as_data_list(), enw_model(), enw_priors_as_data_list(), enw_replace_priors(), remove_profiling(), write_stan_files_no_profile()